Transcript: ENSDART00000169171.2 zgc:174357-202

Description

zgc:174357 [Source:ZFIN;Acc:ZDB-GENE-071004-122]

Location

About this transcript

This transcript has 6 exons, is associated with 123 variant alleles and maps to 965 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000127611.3	zgc:174357-201	994	228aa	ENSDARP00000107640.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000180116.1	zgc:174357-203	525	174aa	ENSDARP00000155893.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8E5F7	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000169171.2	zgc:174357-202	1241	186aa	ENSDARP00000133280.1	Nonsense mediated decay	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 6, Coding exons: 4, Transcript length: 1,241 bps, Translation length: 186 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000169171.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.