Transcript: ENSDART00000167236.2 si:dkey-199k11.5-203

Description

si:dkey-199k11.5 [Source:ZFIN;Acc:ZDB-GENE-060531-87]

Location

Chromosome 4: 39,992,253-40,008,579 reverse strand.

About this transcript

This transcript has 10 exons, is annotated with 38 domains and features, is associated with 57 variant alleles and maps to 844 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000104850.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSDART00000167236.2	si:dkey-199k11.5-203	3524	1103aa	ENSDARP00000132013.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000165574.2	si:dkey-199k11.5-202	3324	1092aa	ENSDARP00000140120.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000171888.2	si:dkey-199k11.5-204	3150	1034aa	ENSDARP00000141101.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
ENSDART00000160459.2	si:dkey-199k11.5-201	716	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-

Summary

Statistics

Exons: 10, Coding exons: 9, Transcript length: 3,524 bps, Translation length: 1,103 residues

Version

ENSDART00000167236.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000167236.2 si:dkey-199k11.5-203

Summary

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Transcript: ENSDART00000167236.2 si:dkey-199k11.5-203

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