Transcript: ENSDART00000165883.2 opn9-201

Description

opsin 9 [Source:ZFIN;Acc:ZDB-GENE-141216-390]

Location

About this transcript

This transcript has 9 exons, is annotated with 43 domains and features, is associated with 414 variant alleles and maps to 50 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000165883.2	opn9-201	2166	521aa	ENSDARP00000133469.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IEG0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000183057.1	opn9-202	1566	521aa	ENSDARP00000144968.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IEG0	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

Summary

Statistics

Exons: 9, Coding exons: 8, Transcript length: 2,166 bps, Translation length: 521 residues

Version

ENSDART00000165883.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

RNA-Seq supported partial [Definitions]