Transcript: ENSDART00000172099.2 si:dkey-74k8.3-203

Description

si:dkey-74k8.3 [Source:ZFIN;Acc:ZDB-GENE-141222-20]

Location

About this transcript

This transcript has 4 exons, is annotated with 22 domains and features, is associated with 328 variant alleles and maps to 90 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000172099.2	si:dkey-74k8.3-203	1709	239aa	ENSDARP00000133559.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IJB1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000164373.2	si:dkey-74k8.3-202	1032	176aa	ENSDARP00000137894.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000164146.2	si:dkey-74k8.3-201	423	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 1,709 bps, Translation length: 239 residues

Version

ENSDART00000172099.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Annotation Attributes

RNA-Seq supported partial [Definitions]