Transcript: ENSDART00000169488.2 APBA1-202

Description

amyloid beta (A4) precursor protein-binding, family A, member 1a [Source:ZFIN;Acc:ZDB-GENE-060526-175]

Location

Chromosome 5: 52,706,316-52,721,325 forward strand.

About this transcript

This transcript has 6 exons, is annotated with 10 domains and features, is associated with 302 variant alleles and maps to 95 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000103848.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000168317.3	APBA1-201	6492	968aa	ENSDARP00000141700.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8M1Q7S5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000170341.2	APBA1-203	3382	957aa	ENSDARP00000137752.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IUM3	-
ENSDART00000189436.1	APBA1-204	2292	458aa	ENSDARP00000148080.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000169488.2	APBA1-202	757	206aa	ENSDARP00000141722.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 757 bps, Translation length: 206 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000169488.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000169488.2 APBA1-202

Summary

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Transcript: ENSDART00000169488.2 APBA1-202

Summary

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