Transcript: ENSDART00000159636.2 vipas39-201

Description

VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog [Source:NCBI gene (formerly Entrezgene);Acc:415096]

Location

About this transcript

This transcript has 17 exons, is associated with 18 variant alleles and maps to 182 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000166762.2	vipas39-202	1867	505aa	ENSDARP00000132081.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000191333.1	vipas39-204	3987	483aa	ENSDARP00000157217.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5TYV4	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000170864.2	vipas39-203	704	234aa	ENSDARP00000138319.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000159636.2	vipas39-201	1938	213aa	ENSDARP00000138365.1	Nonsense mediated decay	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 17, Coding exons: 7, Transcript length: 1,938 bps, Translation length: 213 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000159636.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.