Transcript: ENSDART00000172520.2 HIVEP1-203

Description

HIVEP zinc finger 1 [Source:ZFIN;Acc:ZDB-GENE-070912-512]

Location

Chromosome 19: 3,384,715-3,488,860 reverse strand.

About this transcript

This transcript has 9 exons, is annotated with 81 domains and features, is associated with 1478 variant alleles and maps to 96 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000103658.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000172520.2	HIVEP1-203	10568	2634aa	ENSDARP00000136567.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8M9PS66	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000168139.2	HIVEP1-204	11955	2297aa	ENSDARP00000136102.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000163807.2	HIVEP1-202	587	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-
ENSDART00000166107.2	HIVEP1-201	917	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 9, Coding exons: 8, Transcript length: 10,568 bps, Translation length: 2,634 residues

Version

ENSDART00000172520.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000172520.2 HIVEP1-203

Summary

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Transcript: ENSDART00000172520.2 HIVEP1-203

Summary

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