Transcript: ENSDART00000163616.2 HOMER1-202

Description

homer scaffold protein 1b [Source:ZFIN;Acc:ZDB-GENE-040801-44]

Location

About this transcript

This transcript has 9 exons, is annotated with 13 domains and features, is associated with 588 variant alleles and maps to 145 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000164267.2	HOMER1-201	2349	398aa	ENSDARP00000139264.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B8JIC5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSDART00000163616.2	HOMER1-202	2450	360aa	ENSDARP00000137994.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4INT7	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000159166.2	HOMER1-203	1463	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 2,450 bps, Translation length: 360 residues

Version

ENSDART00000163616.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Annotation Attributes

RNA-Seq supported partial [Definitions]