Transcript: ENSDART00000167423.2 si:dkey-242k1.6-202

Description

methyl-CpG binding domain protein 1a [Source:NCBI gene (formerly Entrezgene);Acc:797143]

Location

About this transcript

This transcript has 6 exons, is annotated with 8 domains and features, is associated with 387 variant alleles and maps to 60 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000180490.1	si:dkey-242k1.6-203	7851	797aa	ENSDARP00000147826.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8Q213	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000167423.2	si:dkey-242k1.6-202	1357	329aa	ENSDARP00000136203.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000160267.2	si:dkey-242k1.6-201	966	89aa	ENSDARP00000140471.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-

Summary

Statistics

Exons: 6, Coding exons: 5, Transcript length: 1,357 bps, Translation length: 329 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000167423.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

RNA-Seq supported partial [Definitions]