Transcript: ENSDART00000167921.2 uvssa-203

Description

UV-stimulated scaffold protein A [Source:ZFIN;Acc:ZDB-GENE-091204-111]

Location

Chromosome 14: 15,129,530-15,154,645 reverse strand.

About this transcript

This transcript has 4 exons, is associated with 28 variant alleles and maps to 53 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000100916.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000160677.2	uvssa-202	2497	721aa	ENSDARP00000133113.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7EXT2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000172666.2	uvssa-204	2326	721aa	ENSDARP00000132945.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7EXT2	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000167921.2	uvssa-203	589	52aa	ENSDARP00000130108.1	Nonsense mediated decay	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000157688.2	uvssa-201	700	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 4, Coding exons: 3, Transcript length: 589 bps, Translation length: 52 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000167921.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000167921.2 uvssa-203

Summary

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Transcript: ENSDART00000167921.2 uvssa-203

Summary

About Us

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