Transcript: ENSDART00000162589.2 SUGT1-204

Description

SGT1 homolog, MIS12 kinetochore complex assembly cochaperone [Source:ZFIN;Acc:ZDB-GENE-041114-56]

Location

About this transcript

This transcript has 6 exons, is associated with 150 variant alleles and maps to 40 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000166819.2	SUGT1-202	1580	322aa	ENSDARP00000135565.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5U3E4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000180692.1	SUGT1-205	2557	330aa	ENSDARP00000148100.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000164984.2	SUGT1-203	640	36aa	ENSDARP00000139631.1	Nonsense mediated decay	-	-
ENSDART00000171868.2	SUGT1-201	668	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-
ENSDART00000162589.2	SUGT1-204	633	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 6, Coding exons: 0, Transcript length: 633 bps,

Version

ENSDART00000162589.2

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.