Transcript: ENSDART00000169854.2 HCCS-201

Description

holocytochrome c synthase b [Source:ZFIN;Acc:ZDB-GENE-000607-78]

Location

About this transcript

This transcript has 5 exons, is associated with 363 variant alleles and maps to 67 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000168398.2	HCCS-202	2058	269aa	ENSDARP00000141384.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q803H2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000176799.2	HCCS-203	2250	269aa	ENSDARP00000144080.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q803H2	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000169854.2	HCCS-201	659	47aa	ENSDARP00000135818.1	Nonsense mediated decay	-	-

Summary

Statistics

Exons: 5, Coding exons: 2, Transcript length: 659 bps, Translation length: 47 residues

Version

ENSDART00000169854.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.