Transcript: ENSDART00000138880.3 si:dkey-103d23.3-201

Description

si:dkey-103d23.3 [Source:ZFIN;Acc:ZDB-GENE-081104-522]

Location

Chromosome 9: 15,782,048-15,789,364 reverse strand.

About this transcript

This transcript has 9 exons, is associated with 3 variant alleles and maps to 206 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000095057.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSDART00000141318.2	si:dkey-103d23.3-202	850	226aa	ENSDARP00000114368.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000138880.3	si:dkey-103d23.3-201	1360	353aa	ENSDARP00000121499.1	Nonsense mediated decay	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000145099.2	si:dkey-103d23.3-203	637	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-

Summary

Statistics

Exons: 9, Coding exons: 7, Transcript length: 1,360 bps, Translation length: 353 residues

Version

ENSDART00000138880.3

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000138880.3 si:dkey-103d23.3-201

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSDART00000138880.3 si:dkey-103d23.3-201

Summary

About Us

Get help

Our sister sites

Follow us