Transcript: ENSDART00000145291.2 si:dkey-27h10.2-203

Description

si:dkey-27h10.2 [Source:ZFIN;Acc:ZDB-GENE-090313-296]

Location

Chromosome 1: 35,690,955-35,695,615 reverse strand.

About this transcript

This transcript has 6 exons, is annotated with 15 domains and features, is associated with 265 variant alleles and maps to 47 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000094485.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000176451.2	si:dkey-27h10.2-204	2411	307aa	ENSDARP00000143819.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F6P6I6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000133813.4	si:dkey-27h10.2-201	1008	307aa	ENSDARP00000116761.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F6P6I6	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000136157.3	si:dkey-27h10.2-202	742	223aa	ENSDARP00000115861.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000145291.2	si:dkey-27h10.2-203	578	188aa	ENSDARP00000118973.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 578 bps, Translation length: 188 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000145291.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000145291.2 si:dkey-27h10.2-203

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSDART00000145291.2 si:dkey-27h10.2-203

Summary

About Us

Get help

Our sister sites

Follow us