Transcript: ENSDART00000143542.2 commd9-202

Description

COMM domain containing 9 [Source:ZFIN;Acc:ZDB-GENE-070424-139]

Gene Synonyms

im:7142515, si:ch211-154e15.3, si:ch211-15d5.2, zgc:136565

Location

About this transcript

This transcript has 5 exons, is associated with 268 variant alleles and maps to 383 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000092925.5	commd9-201	910	197aa	ENSDARP00000087357.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A4QN68	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000148003.2	commd9-203	729	120aa	ENSDARP00000124916.1	Nonsense mediated decay	-	-
ENSDART00000143542.2	commd9-202	769	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 5, Coding exons: 0, Transcript length: 769 bps,

Version

ENSDART00000143542.2

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.