Transcript: ENSDART00000147288.3 si:ch211-209j10.6-203

Description

si:ch211-209j10.6 [Source:ZFIN;Acc:ZDB-GENE-090311-44]

Location

Chromosome 23: 18,904,674-18,913,072 reverse strand.

About this transcript

This transcript has 5 exons, is associated with 8 variant alleles and maps to 336 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000093317.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSDART00000136678.2	si:ch211-209j10.6-201	691	153aa	ENSDARP00000114099.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000147288.3	si:ch211-209j10.6-203	1286	99aa	ENSDARP00000112871.1	Nonsense mediated decay	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000139210.2	si:ch211-209j10.6-202	364	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-

Summary

Statistics

Exons: 5, Coding exons: 3, Transcript length: 1,286 bps, Translation length: 99 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000147288.3

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000147288.3 si:ch211-209j10.6-203

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Transcript: ENSDART00000147288.3 si:ch211-209j10.6-203

Summary

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