Transcript: ENSDART00000140387.2 TPT1-202

Description

tumor protein, translationally-controlled 1 [Source:ZFIN;Acc:ZDB-GENE-990603-10]

Location

About this transcript

This transcript has 3 exons, is associated with 37 variant alleles and maps to 87 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000102111.5	TPT1-204	1139	171aa	ENSDARP00000092887.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9DGK4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000141569.3	TPT1-203	776	159aa	ENSDARP00000122684.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000122137.3	TPT1-206	583	111aa	ENSDARP00000110449.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000138240.2	TPT1-201	729	111aa	ENSDARP00000120764.1	Nonsense mediated decay	-	-
ENSDART00000149038.3	TPT1-205	816	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-
ENSDART00000140387.2	TPT1-202	877	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 877 bps,

Version

ENSDART00000140387.2

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.