Transcript: ENSDART00000140260.3 aup1-202

Description

AUP1 lipid droplet regulating VLDL assembly factor [Source:NCBI gene (formerly Entrezgene);Acc:324654]

Location

About this transcript

This transcript has 8 exons, is associated with 445 variant alleles and maps to 67 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000054867.6	aup1-201	1866	423aa	ENSDARP00000054866.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6PBN5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000140260.3	aup1-202	865	82aa	ENSDARP00000124945.1	Nonsense mediated decay	-	-
ENSDART00000148224.3	aup1-204	879	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000147437.2	aup1-203	455	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 8, Coding exons: 3, Transcript length: 865 bps, Translation length: 82 residues

Version

ENSDART00000140260.3

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.