Transcript: ENSDART00000126979.4 UBXN1-204

Description

UBX domain protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-792]

Location

About this transcript

This transcript has 10 exons, is annotated with 20 domains and features, is associated with 45 variant alleles and maps to 268 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSDART00000126979.4	UBXN1-204	1295	294aa	ENSDARP00000108064.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000173284.2	UBXN1-202	820	222aa	ENSDARP00000142132.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000172952.2	UBXN1-201	437	124aa	ENSDARP00000142432.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000173261.2	UBXN1-203	520	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-

Summary

Statistics

Exons: 10, Coding exons: 9, Transcript length: 1,295 bps, Translation length: 294 residues

Version

ENSDART00000126979.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.