Transcript: ENSDART00000153743.2 rp1l1a-201

Description

rp1 like 1a [Source:ZFIN;Acc:ZDB-GENE-120711-1]

Location

Chromosome 17: 5,793,248-5,822,120 forward strand.

About this transcript

This transcript has 4 exons, is annotated with 74 domains and features, is associated with 838 variant alleles and maps to 102 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000089458.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000153743.2	rp1l1a-201	7925	2394aa	ENSDARP00000127535.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8M2BH38	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000175504.2	rp1l1a-203	2715	295aa	ENSDARP00000144143.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000157039.2	rp1l1a-202	600	62aa	ENSDARP00000129546.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 4, Coding exons: 3, Transcript length: 7,925 bps, Translation length: 2,394 residues

Version

ENSDART00000153743.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000153743.2 rp1l1a-201

Summary

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Transcript: ENSDART00000153743.2 rp1l1a-201

Summary

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