Transcript: ENSDART00000147387.2 col23a1b-202

Description

collagen type XXIII alpha 1 chain b [Source:ZFIN;Acc:ZDB-GENE-091204-86]

Location

Chromosome 21: 32,092,451-32,097,908 reverse strand.

About this transcript

This transcript has 14 exons, is annotated with 14 domains and features, is associated with 288 variant alleles and maps to 43 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000089078.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSDART00000193026.1	col23a1b-204	2957	416aa	ENSDARP00000149308.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSDART00000185015.1	col23a1b-203	3809	408aa	ENSDARP00000145291.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000123419.3	col23a1b-201	1346	395aa	ENSDARP00000110199.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000147387.2	col23a1b-202	833	235aa	ENSDARP00000114593.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 14, Coding exons: 14, Transcript length: 833 bps, Translation length: 235 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000147387.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000147387.2 col23a1b-202

Summary

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Transcript: ENSDART00000147387.2 col23a1b-202

Summary

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