Transcript: ENSDART00000145052.3 si:dkey-100n23.5-206

Description

si:dkey-100n23.5 [Source:ZFIN;Acc:ZDB-GENE-070912-347]

Location

Chromosome 9: 30,249,415-30,259,481 reverse strand.

About this transcript

This transcript has 12 exons, is annotated with 25 domains and features, is associated with 487 variant alleles and maps to 122 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000086911.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000129926.4	si:dkey-100n23.5-201	1566	349aa	ENSDARP00000110693.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8M1PYQ1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000145052.3	si:dkey-100n23.5-206	808	217aa	ENSDARP00000113505.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000140585.3	si:dkey-100n23.5-204	800	250aa	ENSDARP00000116892.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000139106.3	si:dkey-100n23.5-203	710	236aa	ENSDARP00000120740.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000144259.2	si:dkey-100n23.5-205	543	127aa	ENSDARP00000119483.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000132319.2	si:dkey-100n23.5-202	707	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 12, Coding exons: 12, Transcript length: 808 bps, Translation length: 217 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000145052.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000145052.3 si:dkey-100n23.5-206

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Transcript: ENSDART00000145052.3 si:dkey-100n23.5-206

Summary

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