Transcript: ENSDART00000124820.4 strc1-201

Description

stereocilin 1 [Source:ZFIN;Acc:ZDB-GENE-110411-215]

Location

Chromosome 7: 31,398,775-31,425,456 forward strand.

About this transcript

This transcript has 25 exons, is annotated with 13 domains and features, is associated with 481 variant alleles and maps to 209 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000079336.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000180780.1	strc1-203	6569	2032aa	ENSDARP00000151799.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSDART00000182166.1	strc1-204	6473	2000aa	ENSDARP00000146049.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8PYF0	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000124820.4	strc1-201	5815	1714aa	ENSDARP00000112079.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000173685.2	strc1-202	1068	243aa	ENSDARP00000142631.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 25, Coding exons: 25, Transcript length: 5,815 bps, Translation length: 1,714 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000124820.4

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

RNA-Seq supported partial [Definitions]

Transcript: ENSDART00000124820.4 strc1-201

Summary

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Transcript: ENSDART00000124820.4 strc1-201

Summary

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