Transcript: ENSDART00000134102.3 col17a1b-202

Description

collagen, type XVII, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-7145]

Location

About this transcript

This transcript has 51 exons, is annotated with 67 domains and features, is associated with 516 variant alleles and maps to 408 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSDART00000134102.3	col17a1b-202	4533	1368aa	ENSDARP00000121297.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000021053.10	col17a1b-201	2349	663aa	ENSDARP00000022516.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000137074.2	col17a1b-203	510	170aa	ENSDARP00000113743.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,

Summary

Statistics

Exons: 51, Coding exons: 51, Transcript length: 4,533 bps, Translation length: 1,368 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000134102.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.