Transcript: ENSDART00000144088.5 SDK1-201

Description

sidekick cell adhesion molecule 1a [Source:ZFIN;Acc:ZDB-GENE-081104-374]

Location

Chromosome 3: 40,978,997-41,292,275 reverse strand.

About this transcript

This transcript has 44 exons, is annotated with 123 domains and features, is associated with 6061 variant alleles and maps to 149 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000078866.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSDART00000111856.4	SDK1-202	6480	2159aa	ENSDARP00000101299.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000144088.5	SDK1-201	7619	2117aa	ENSDARP00000118011.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 44, Coding exons: 44, Transcript length: 7,619 bps, Translation length: 2,117 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000144088.5

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000144088.5 SDK1-201

Summary

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Transcript: ENSDART00000144088.5 SDK1-201

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