Transcript: ENSDART00000151920.3 si:ch211-140m22.7-207

Description

si:ch211-140m22.7 [Source:ZFIN;Acc:ZDB-GENE-070912-73]

Location

Chromosome 9: 19,489,304-19,504,697 forward strand.

About this transcript

This transcript has 6 exons, is annotated with 14 domains and features, is associated with 164 variant alleles and maps to 98 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000077967.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000190572.1	si:ch211-140m22.7-210	1821	462aa	ENSDARP00000154204.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8RW11	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSDART00000151920.3	si:ch211-140m22.7-207	1437	452aa	ENSDARP00000126503.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000147571.4	si:ch211-140m22.7-203	837	186aa	ENSDARP00000117347.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000114256.4	si:ch211-140m22.7-201	801	122aa	ENSDARP00000104105.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7F2K4	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000152034.2	si:ch211-140m22.7-209	619	134aa	ENSDARP00000126528.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000152032.3	si:ch211-140m22.7-208	498	112aa	ENSDARP00000126567.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000151918.3	si:ch211-140m22.7-206	387	54aa	ENSDARP00000126406.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000147148.3	si:ch211-140m22.7-202	863	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000150281.2	si:ch211-140m22.7-204	778	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000151909.2	si:ch211-140m22.7-205	247	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 6, Coding exons: 5, Transcript length: 1,437 bps, Translation length: 452 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000151920.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000151920.3 si:ch211-140m22.7-207

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Transcript: ENSDART00000151920.3 si:ch211-140m22.7-207

Summary

About Us

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