Transcript: ENSDART00000173123.2 synpo2la-202

Description

synaptopodin 2-like a [Source:ZFIN;Acc:ZDB-GENE-090828-4]

Location

About this transcript

This transcript has 4 exons, is annotated with 26 domains and features, is associated with 397 variant alleles and maps to 152 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000108472.4	synpo2la-201	6606	1179aa	ENSDARP00000100180.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1RCC9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000173123.2	synpo2la-202	6145	1151aa	ENSDARP00000142591.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A140LH61	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 6,145 bps, Translation length: 1,151 residues

Version

ENSDART00000173123.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

RNA-Seq supported partial [Definitions]