Transcript: ENSDART00000142979.3 ARHGEF16-201

Description

Rho guanine nucleotide exchange factor (GEF) 16 [Source:ZFIN;Acc:ZDB-GENE-081104-446]

Location

Chromosome 8: 47,099,033-47,143,828 forward strand.

About this transcript

This transcript has 15 exons, is annotated with 18 domains and features, is associated with 1717 variant alleles and maps to 185 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000077114.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000142979.3	ARHGEF16-201	2231	606aa	ENSDARP00000112801.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B0S4U0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000114811.3	ARHGEF16-203	1821	606aa	ENSDARP00000101268.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000143110.2	ARHGEF16-202	760	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-

Summary

Statistics

Exons: 15, Coding exons: 14, Transcript length: 2,231 bps, Translation length: 606 residues

Version

ENSDART00000142979.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000142979.3 ARHGEF16-201

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Transcript: ENSDART00000142979.3 ARHGEF16-201

Summary

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