Transcript: ENSDART00000142897.2 cspg4ba-202

Description

chondroitin sulfate proteoglycan 4ba [Source:ZFIN;Acc:ZDB-GENE-070705-337]

Location

About this transcript

This transcript has 9 exons, is annotated with 49 domains and features, is associated with 321 variant alleles and maps to 142 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000114078.4	cspg4ba-201	9993	2389aa	ENSDARP00000101512.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8M2BCP5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000142897.2	cspg4ba-202	7112	2370aa	ENSDARP00000121158.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 7,112 bps, Translation length: 2,370 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000142897.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.