Transcript: ENSDART00000150188.3 ppm1ka-203

Description

protein phosphatase, Mg2+/Mn2+ dependent 1Ka [Source:ZFIN;Acc:ZDB-GENE-110411-37]

Location

About this transcript

This transcript has 7 exons, is associated with 979 variant alleles and maps to 64 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000113757.4	ppm1ka-201	3708	358aa	ENSDARP00000103131.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7FAZ1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000149534.2	ppm1ka-202	1392	358aa	ENSDARP00000124931.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7FAZ1	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000150188.3	ppm1ka-203	1592	203aa	ENSDARP00000124093.1	Nonsense mediated decay	-	-

Summary

Statistics

Exons: 7, Coding exons: 3, Transcript length: 1,592 bps, Translation length: 203 residues

Version

ENSDART00000150188.3

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.