Transcript: ENSDART00000009564.9 SHOX2-201

Description

shox homeobox 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1457]

Location

About this transcript

This transcript has 5 exons, is annotated with 20 domains and features, is associated with 159 variant alleles and maps to 272 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000009564.9	SHOX2-201	1684	299aa	ENSDARP00000018280.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7SZN8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000138941.2	SHOX2-203	884	200aa	ENSDARP00000121424.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000135460.2	SHOX2-202	854	191aa	ENSDARP00000119167.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 1,684 bps, Translation length: 299 residues

Version

ENSDART00000009564.9

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.