Transcript: ENSDART00000121586.3 chd7-202

Description

chromodomain helicase DNA binding protein 7 [Source:HGNC Symbol;Acc:HGNC:20626]

Location

Chromosome 2: 21,807,726-21,819,421 reverse strand.

About this transcript

This transcript has 2 exons, is annotated with 2 domains and features, is associated with 187 variant alleles and maps to 132 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000075211.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000135230.2	chd7-203	10963	3140aa	ENSDARP00000114372.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QGL1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000016208.9	chd7-201	7281	2426aa	ENSDARP00000011638.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000121586.3	chd7-202	515	62aa	ENSDARP00000108570.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000136876.2	chd7-204	494	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 2, Coding exons: 1, Transcript length: 515 bps, Translation length: 62 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000121586.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000121586.3 chd7-202

Summary

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Transcript: ENSDART00000121586.3 chd7-202

Summary

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