Transcript: ENSDART00000171621.2 pusl1-204

Description

pseudouridine synthase like 1 [Source:ZFIN;Acc:ZDB-GENE-101110-1]

Location

About this transcript

This transcript has 7 exons, is annotated with 9 domains and features, is associated with 659 variant alleles and maps to 67 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000171621.2	pusl1-204	1414	285aa	ENSDARP00000137938.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSDART00000113096.5	pusl1-201	5364	291aa	ENSDARP00000102458.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QJL2	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000160808.2	pusl1-202	740	214aa	ENSDARP00000132620.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000163336.2	pusl1-203	559	69aa	ENSDARP00000137758.1	Nonsense mediated decay	-	-

Summary

Statistics

Exons: 7, Coding exons: 7, Transcript length: 1,414 bps, Translation length: 285 residues

Version

ENSDART00000171621.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Annotation Attributes

RNA-Seq supported partial [Definitions]