Transcript: ENSDART00000115263.4 rapgef5b-202

Description

Rap guanine nucleotide exchange factor (GEF) 5b [Source:ZFIN;Acc:ZDB-GENE-061215-2]

Location

About this transcript

This transcript has 10 exons, is annotated with 7 domains and features, is associated with 1011 variant alleles and maps to 96 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSDART00000115263.4	rapgef5b-202	1150	341aa	ENSDARP00000102028.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSDART00000114954.5	rapgef5b-201	3730	860aa	ENSDARP00000100132.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000182430.1	rapgef5b-205	2822	730aa	ENSDARP00000152599.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
ENSDART00000137107.2	rapgef5b-203	837	138aa	ENSDARP00000119810.1	Nonsense mediated decay	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000140727.2	rapgef5b-204	812	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-

Summary

Statistics

Exons: 10, Coding exons: 10, Transcript length: 1,150 bps, Translation length: 341 residues

Version

ENSDART00000115263.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.