Transcript: ENSDART00000169279.2 gpc5c-202

Description

glypican 5c [Source:ZFIN;Acc:ZDB-GENE-141112-1]

Location

About this transcript

This transcript has 5 exons, is annotated with 8 domains and features, is associated with 1872 variant alleles and maps to 56 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSDART00000114225.4	gpc5c-201	1371	456aa	ENSDARP00000098897.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSDART00000169279.2	gpc5c-202	1311	436aa	ENSDARP00000140971.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 1,311 bps, Translation length: 436 residues

Version

ENSDART00000169279.2

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.