Transcript: ENSDART00000114330.4 PDZRN3-201

Description

PDZ domain containing RING finger 3b [Source:ZFIN;Acc:ZDB-GENE-071022-4]

Location

About this transcript

This transcript has 10 exons, is annotated with 38 domains and features, is associated with 3800 variant alleles and maps to 221 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000114330.4	PDZRN3-201	4320	1053aa	ENSDARP00000101938.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7FDW2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000193007.1	PDZRN3-203	5753	1024aa	ENSDARP00000145553.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000193603.1	PDZRN3-204	5723	1014aa	ENSDARP00000154894.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000157215.2	PDZRN3-202	555	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-

Summary

Statistics

Exons: 10, Coding exons: 10, Transcript length: 4,320 bps, Translation length: 1,053 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: E7FDW2

Version

ENSDART00000114330.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.