Transcript: ENSDART00000039700.7 ITGB1-201

Description

integrin, beta 1a [Source:ZFIN;Acc:ZDB-GENE-060803-2]

Location

About this transcript

This transcript has 16 exons, is annotated with 56 domains and features, is associated with 1439 variant alleles and maps to 189 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000039700.7	ITGB1-201	3414	798aa	ENSDARP00000039699.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QG85	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSDART00000177356.2	ITGB1-202	6015	802aa	ENSDARP00000143985.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8M6YW86	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,

Summary

Statistics

Exons: 16, Coding exons: 15, Transcript length: 3,414 bps, Translation length: 798 residues

Version

ENSDART00000039700.7

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.