Transcript: ENSDART00000106166.5 rx1-201

Description

retinal homeobox gene 1 [Source:ZFIN;Acc:ZDB-GENE-990415-236]

Location

About this transcript

This transcript has 4 exons, is annotated with 16 domains and features, is associated with 301 variant alleles and maps to 197 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000106166.5	rx1-201	2884	330aa	ENSDARP00000096944.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6P984	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000187998.1	rx1-203	4131	330aa	ENSDARP00000146609.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6P984	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000134813.2	rx1-202	938	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 4, Coding exons: 3, Transcript length: 2,884 bps, Translation length: 330 residues

Version

ENSDART00000106166.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.