Transcript: ENSDART00000105903.5 LSM5-201

Description

LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated [Source:ZFIN;Acc:ZDB-GENE-070822-23]

Location

About this transcript

This transcript has 5 exons, is annotated with 8 domains and features, is associated with 73 variant alleles and maps to 77 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000105903.5	LSM5-201	739	91aa	ENSDARP00000096681.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A7E2L8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000134356.3	LSM5-202	516	62aa	ENSDARP00000121634.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000139786.2	LSM5-203	478	62aa	ENSDARP00000116972.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000138363.2	LSM5-204	758	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 739 bps, Translation length: 91 residues

Version

ENSDART00000105903.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.