Transcript: ENSDART00000143804.3 PUS7L-203

Description

si:dkey-234l24.4, pseudogene [Source:ZFIN;Acc:ZDB-GENEP-050420-8]

Location

Chromosome 4: 14,188,327-14,192,254 reverse strand.

About this transcript

This transcript has 9 exons, is annotated with 14 domains and features, is associated with 129 variant alleles and maps to 491 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000069780.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000143804.3	PUS7L-203	2241	643aa	ENSDARP00000115135.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q1L8I0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000147928.3	PUS7L-202	1627	418aa	ENSDARP00000121855.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000142374.2	PUS7L-204	623	170aa	ENSDARP00000122924.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000136730.2	PUS7L-205	585	164aa	ENSDARP00000121067.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000141925.2	PUS7L-201	668	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-
ENSDART00000142398.2	PUS7L-206	505	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-

Summary

Statistics

Exons: 9, Coding exons: 8, Transcript length: 2,241 bps, Translation length: 643 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q1L8I0

Version

ENSDART00000143804.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Transcript: ENSDART00000143804.3 PUS7L-203

Summary

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Transcript: ENSDART00000143804.3 PUS7L-203

Summary

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