Transcript: ENSDART00000147089.3 GRIK1-201

Description

glutamate receptor, ionotropic, kainate 1a [Source:ZFIN;Acc:ZDB-GENE-030131-6502]

Location

Chromosome 10: 25,403,023-25,561,751 reverse strand.

About this transcript

This transcript has 16 exons, is annotated with 39 domains and features, is associated with 2397 variant alleles and maps to 241 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000069139.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000147089.3	GRIK1-201	3192	904aa	ENSDARP00000118019.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9QGN5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000007778.10	GRIK1-206	3874	867aa	ENSDARP00000004703.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000134215.2	GRIK1-203	747	207aa	ENSDARP00000119664.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000136989.2	GRIK1-204	756	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-
ENSDART00000140023.2	GRIK1-205	752	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-
ENSDART00000147876.2	GRIK1-202	600	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 16, Coding exons: 16, Transcript length: 3,192 bps, Translation length: 904 residues

Version

ENSDART00000147089.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000147089.3 GRIK1-201

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSDART00000147089.3 GRIK1-201

Summary

About Us

Get help

Our sister sites

Follow us