Transcript: ENSDART00000138345.2 SEMA5B-201

Description

sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5Ba [Source:ZFIN;Acc:ZDB-GENE-070912-187]

Location

Chromosome 9: 37,481,434-37,613,792 reverse strand.

About this transcript

This transcript has 20 exons, is annotated with 48 domains and features, is associated with 2160 variant alleles and maps to 265 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000061471.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000188967.1	SEMA5B-202	3931	1101aa	ENSDARP00000156056.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QPQ6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000187886.1	SEMA5B-203	3851	1101aa	ENSDARP00000145675.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QPQ6	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000087663.6	SEMA5B-205	3604	1101aa	ENSDARP00000082097.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QPQ6	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000138345.2	SEMA5B-201	3116	1038aa	ENSDARP00000119961.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000188143.1	SEMA5B-204	2991	955aa	ENSDARP00000145898.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-

Summary

Statistics

Exons: 20, Coding exons: 20, Transcript length: 3,116 bps, Translation length: 1,038 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000138345.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000138345.2 SEMA5B-201

Summary

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Transcript: ENSDART00000138345.2 SEMA5B-201

Summary

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