Transcript: ENSDART00000149226.3 KDM1A-206

Description

lysine (K)-specific demethylase 1a [Source:ZFIN;Acc:ZDB-GENE-030131-7828]

Location

Chromosome 17: 28,097,357-28,101,975 reverse strand.

About this transcript

This transcript has 7 exons, is annotated with 17 domains and features, is associated with 269 variant alleles and maps to 66 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000060679.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000085758.6	KDM1A-204	3367	833aa	ENSDARP00000080193.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F6NIA2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000180532.1	KDM1A-208	5311	858aa	ENSDARP00000150698.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000149226.3	KDM1A-206	887	273aa	ENSDARP00000124977.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000149861.3	KDM1A-205	606	202aa	ENSDARP00000125081.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000149458.2	KDM1A-202	500	130aa	ENSDARP00000123983.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000149543.2	KDM1A-207	456	152aa	ENSDARP00000124296.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000149654.2	KDM1A-203	1015	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000149767.2	KDM1A-201	975	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 7, Coding exons: 6, Transcript length: 887 bps, Translation length: 273 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000149226.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000149226.3 KDM1A-206

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Transcript: ENSDART00000149226.3 KDM1A-206

Summary

About Us

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