Transcript: ENSDART00000017309.11 PTPRG-203

Description

carbonic anhydrase XVI b [Source:ZFIN;Acc:ZDB-GENE-080818-1]

Location

About this transcript

This transcript has 29 exons, is annotated with 58 domains and features, is associated with 2834 variant alleles and maps to 222 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000017309.11	PTPRG-203	5305	1382aa	ENSDARP00000002722.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8M1QQH6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000169722.2	PTPRG-204	3741	1246aa	ENSDARP00000137770.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000154392.2	PTPRG-201	632	211aa	ENSDARP00000128049.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000153489.2	PTPRG-202	1123	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 29, Coding exons: 29, Transcript length: 5,305 bps, Translation length: 1,382 residues

Version

ENSDART00000017309.11

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.