Transcript: ENSDART00000148463.3 SNX6-201

Description

sorting nexin 6 [Source:ZFIN;Acc:ZDB-GENE-050913-152]

Location

About this transcript

This transcript has 14 exons, is annotated with 16 domains and features, is associated with 625 variant alleles and maps to 183 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000148463.3	SNX6-201	3131	407aa	ENSDARP00000123712.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F8W5C6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSDART00000162893.3	SNX6-202	1221	406aa	ENSDARP00000133668.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

Summary

Statistics

Exons: 14, Coding exons: 14, Transcript length: 3,131 bps, Translation length: 407 residues

Version

ENSDART00000148463.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.