Transcript: ENSDART00000158138.2 pcdh1g9-202

Description

protocadherin 1 gamma 9 [Source:ZFIN;Acc:ZDB-GENE-050609-5]

Location

About this transcript

This transcript has 5 exons, is associated with 426 variant alleles and maps to 40 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSDART00000183782.1	pcdh1g9-204	4463	970aa	ENSDARP00000154138.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSDART00000090748.6	pcdh1g9-201	2911	891aa	ENSDARP00000085181.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000161107.2	pcdh1g9-203	4472	638aa	ENSDARP00000134389.1	Nonsense mediated decay	-
ENSDART00000158138.2	pcdh1g9-202	838	137aa	ENSDARP00000137403.1	Nonsense mediated decay	-

Summary

Statistics

Exons: 5, Coding exons: 4, Transcript length: 838 bps, Translation length: 137 residues

Version

ENSDART00000158138.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.