Transcript: ENSDART00000172974.2 SLC30A9-201

Description

solute carrier family 30 member 9 [Source:ZFIN;Acc:ZDB-GENE-040724-254]

Location

Chromosome 14: 44,804,408-44,808,828 forward strand.

About this transcript

This transcript has 6 exons, is annotated with 3 domains and features, is associated with 226 variant alleles and maps to 119 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000057272.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000079866.7	SLC30A9-203	3259	573aa	ENSDARP00000074317.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5PQZ3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000180361.1	SLC30A9-204	4912	573aa	ENSDARP00000148224.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5PQZ3	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000172974.2	SLC30A9-201	561	154aa	ENSDARP00000142124.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000138897.2	SLC30A9-202	505	89aa	ENSDARP00000114845.1	Nonsense mediated decay	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 6, Coding exons: 5, Transcript length: 561 bps, Translation length: 154 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000172974.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000172974.2 SLC30A9-201

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSDART00000172974.2 SLC30A9-201

Summary

About Us

Get help

Our sister sites

Follow us