Transcript: ENSDART00000149927.2 fdx1-204

Description

ferredoxin 1 [Source:ZFIN;Acc:ZDB-GENE-071015-2]

Location

About this transcript

This transcript has 5 exons, is annotated with 1 domain and feature, is associated with 90 variant alleles and maps to 111 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000144430.3	fdx1-202	952	175aa	ENSDARP00000113657.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7F7J1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000147450.2	fdx1-203	927	51aa	ENSDARP00000118328.1	Nonsense mediated decay	-	-
ENSDART00000149927.2	fdx1-204	870	175aa	ENSDARP00000124949.1	Nonsense mediated decay	E7F7J1	-
ENSDART00000078904.7	fdx1-201	730	175aa	ENSDARP00000073363.5	Nonsense mediated decay	E7F7J1	-
ENSDART00000150164.2	fdx1-205	474	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-

Summary

Statistics

Exons: 5, Coding exons: 4, Transcript length: 870 bps, Translation length: 175 residues

Version

ENSDART00000149927.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.