Transcript: ENSDART00000144215.3 pcnx2-203

Description

pecanex 2 [Source:ZFIN;Acc:ZDB-GENE-090312-150]

Location

Chromosome 13: 23,677,949-23,714,480 forward strand.

About this transcript

This transcript has 28 exons, is annotated with 58 domains and features, is associated with 720 variant alleles and maps to 98 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000055698.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000188518.1	pcnx2-204	10823	2005aa	ENSDARP00000151902.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8QI88	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000078079.5	pcnx2-201	10712	1968aa	ENSDARP00000072542.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000144215.3	pcnx2-203	4354	1437aa	ENSDARP00000113268.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000134973.2	pcnx2-202	925	203aa	ENSDARP00000115196.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 28, Coding exons: 28, Transcript length: 4,354 bps, Translation length: 1,437 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000144215.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000144215.3 pcnx2-203

Summary

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Transcript: ENSDART00000144215.3 pcnx2-203

Summary

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