Transcript: ENSDART00000137112.2 fras1-203

Description

Fraser extracellular matrix complex subunit 1 [Source:ZFIN;Acc:ZDB-GENE-060526-68]

Location

About this transcript

This transcript has 71 exons, is annotated with 135 domains and features, is associated with 5263 variant alleles and maps to 336 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000160236.2	fras1-205	12268	4003aa	ENSDARP00000138474.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IQJ3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000137112.2	fras1-203	12999	3936aa	ENSDARP00000116842.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000097856.5	fras1-202	11970	3989aa	ENSDARP00000088628.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000076845.7	fras1-201	11913	3970aa	ENSDARP00000071316.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1Q633	-
ENSDART00000144008.2	fras1-204	505	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-

Summary

Statistics

Exons: 71, Coding exons: 71, Transcript length: 12,999 bps, Translation length: 3,936 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000137112.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.